get. --> getX

vacLabTools/NAMESPACE

@@ -10,12 +10,12 @@ export(fn.4096)
 export(fn.4403)
 export(fn.7904)
 export(fn.Afit)
-export(get.ce3.doc)
-export(get.const.doc)
-export(get.defaults)
-export(get.fm1.doc)
+export(getCe3Doc)
+export(getConstDoc)
 export(getConstVal)
 export(getConvFactor)
+export(getDefaults)
+export(getFm1Doc)
 export(getSubList)
 export(getValVect)
 export(refreshAnalysis)

vacLabTools/R/defaults.r

-#' Returns a list of vaclab default values
+#' Returns a list of vaclab default values. The package
+#' aims on the structure given in the \code{vl_db} database.
 #'
 #' @author wactbprot 
 #' @export
-#' @usage get.defaults()
+#' @usage getDefaults()
 #' @examples
 #' \dontrun{
-#' d <- get.defaults()
+#' d <- getDefaults()
 #' $db$fm1.id
 #' #> "std-fm1"
 #' }
@@ -13,11 +14,12 @@
 #' @keywords misc
 #'
 
-get.defaults <- function(){
+getDefaults <- function(){
     d <- list()
     
     ## path
     d$path <- list()
+    ## vlr
     d$path$inst <- "/usr/local/lib/vlr"
     
     ## db

vacLabTools/R/get_ce3_doc.r

@@ -4,17 +4,17 @@
 #' @author wactbprot 
 #' @export
 #' @import R4CouchDB
-#' @usage get.ce3.doc()
+#' @usage getCe3Doc()
 #' @examples
 #' \dontrun{
-#' ce3doc <- get.ce3.doc()
+#' ce3doc <- getCe3Doc()
 #' }
 #' @return \item{doc}{the ce3 standard document}
 #' @keywords misc
 #'
 
-get.ce3.doc <- function(){
-    d          <- get.defaults()
+getCe3Doc <- function(){
+    d          <- getDefaults()
     cdb        <- cdbIni()
     cdb$DBName <- d$db$name
     cdb$id     <- d$db$ce3.id

vacLabTools/R/get_const_doc.r

@@ -4,16 +4,16 @@
 #' @author wactbprot 
 #' @export
 #' @import R4CouchDB
-#' @usage get.const.doc()
+#' @usage getConstDoc()
 #' @examples
 #' \dontrun{
-#' constsdoc <- get.defaults()
+#' constsdoc <- getConstDoc()
 #' }
 #' @return \item{doc}{the constants document}
 #' @keywords misc
 #'
 
-get.const.doc <- function(){
+getConstDoc <- function(){
     d          <- get.defaults()
     cdb        <- cdbIni()
     cdb$DBName <- d$db$name

vacLabTools/R/get_fm1_doc.r

@@ -4,17 +4,17 @@
 #' @author wactbprot 
 #' @export
 #' @import R4CouchDB
-#' @usage get.fm1.doc()
+#' @usage getFm1Doc()
 #' @examples
 #' \dontrun{
-#'   fm1doc <- get.fm1.doc()
+#'   fm1doc <- getFm1Doc()
 #' }
 #' @return \item{doc}{the fm1 standard document}
 #' @keywords misc
 #'
 
-get.fm1.doc <- function(){
-    d          <- get.defaults()
+getFm1Doc <- function(){
+    d          <- getDefaults()
     cdb        <- cdbIni()
     cdb$DBName <- d$db$name
     cdb$id     <- d$db$fm1.id

vacLabTools/man/get.ce3.doc.Rd → vacLabTools/man/getCe3Doc.Rd

 % Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/get_ce3_doc.r
-\name{get.ce3.doc}
-\alias{get.ce3.doc}
+\name{getCe3Doc}
+\alias{getCe3Doc}
 \title{Returns the ce3 standard document from the database by
 means of the \code{get.defaults()} function.}
 \usage{
-get.ce3.doc()
+getCe3Doc()
 }
 \value{
 \item{doc}{the ce3 standard document}
@@ -16,7 +16,7 @@ means of the \code{get.defaults()} function.
 }
 \examples{
 \dontrun{
-ce3doc <- get.ce3.doc()
+ce3doc <- getCe3Doc()
 }
 }
 \author{

vacLabTools/man/get.const.doc.Rd → vacLabTools/man/getConstDoc.Rd

 % Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/get_const_doc.r
-\name{get.const.doc}
-\alias{get.const.doc}
+\name{getConstDoc}
+\alias{getConstDoc}
 \title{Gets the constants document from the database by
 means of the \code{get.defaults()} function.}
 \usage{
-get.const.doc()
+getConstDoc()
 }
 \value{
 \item{doc}{the constants document}
@@ -16,7 +16,7 @@ means of the \code{get.defaults()} function.
 }
 \examples{
 \dontrun{
-constsdoc <- get.defaults()
+constsdoc <- getConstDoc()
 }
 }
 \author{

vacLabTools/man/get.defaults.Rd → vacLabTools/man/getDefaults.Rd

 % Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/defaults.r
-\name{get.defaults}
-\alias{get.defaults}
-\title{Returns a list of vaclab default values}
+\name{getDefaults}
+\alias{getDefaults}
+\title{Returns a list of vaclab default values. The package
+aims on the structure given in the \code{vl_db} database.}
 \usage{
-get.defaults()
+getDefaults()
 }
 \value{
 \item{l}{list of defaults}
 }
 \description{
-Returns a list of vaclab default values
+Returns a list of vaclab default values. The package
+aims on the structure given in the \code{vl_db} database.
 }
 \examples{
 \dontrun{
-d <- get.defaults()
+d <- getDefaults()
 $db$fm1.id
 #> "std-fm1"
 }

vacLabTools/man/get.fm1.doc.Rd → vacLabTools/man/getFm1Doc.Rd

 % Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/get_fm1_doc.r
-\name{get.fm1.doc}
-\alias{get.fm1.doc}
+\name{getFm1Doc}
+\alias{getFm1Doc}
 \title{Returns the fm1 standard document from the database by
 means of the \code{get.defaults()} function.}
 \usage{
-get.fm1.doc()
+getFm1Doc()
 }
 \value{
 \item{doc}{the fm1 standard document}
@@ -16,7 +16,7 @@ means of the \code{get.defaults()} function.
 }
 \examples{
 \dontrun{
-  fm1doc <- get.fm1.doc()
+  fm1doc <- getFm1Doc()
 }
 }
 \author{