Merge branch 'update-repo-setup' into 'main'

Update README and add gitignore

See merge request !5

.gitignore

+# general
+build/
+__pycache__/
+.ipynb_checkpoints/
+*.swp
+*.swo
+*.pdf

README.md

-# Tutorials
+# Inverse Problems for Beginners
 
+## Information
 
+Here are some links to packages this tutorial is using:
 
-## Getting started
-
-To make it easy for you to get started with GitLab, here's a list of recommended next steps.
-
-Already a pro? Just edit this README.md and make it your own. Want to make it easy? [Use the template at the bottom](#editing-this-readme)!
-
-## Add your files
-
-- [ ] [Create](https://docs.gitlab.com/ee/user/project/repository/web_editor.html#create-a-file) or [upload](https://docs.gitlab.com/ee/user/project/repository/web_editor.html#upload-a-file) files
-- [ ] [Add files using the command line](https://docs.gitlab.com/ee/gitlab-basics/add-file.html#add-a-file-using-the-command-line) or push an existing Git repository with the following command:
+| What | Where |
+| --- | --- |
+| PyThia repository | [https://gitlab.com/pythia-uq/pythia](https://gitlab.com/pythia-uq/pythia) |
+| PyThia doc | [https://pythia-uq.readthedocs.io](https://pythia-uq.readthedocs.io) |
+| emcee doc | [https://emcee.readthedocs.io/](https://emcee.readthedocs.io/) |
 
+## Setup
+After cloning the repository, you need to ensure all required python packages are installed.
+A specification of all requirements and their respective versions are listed in the `environment.yml` file.
+You can use this file to create a new conda environment called `tutorial`, which is ready to execute the files of this repository.
+To do so, run the following line in the repositry root (where this README is located):
+```sh
+conda env create -f environment.yml
 ```
-cd existing_repo
-git remote add origin https://gitlab1.ptb.de/ptb-843/tutorials.git
-git branch -M main
-git push -uf origin main
-```
-
-## Integrate with your tools
-
-- [ ] [Set up project integrations](https://gitlab1.ptb.de/ptb-843/tutorials/-/settings/integrations)
-
-## Collaborate with your team
+Then start the environment using `conda activate tutorial`.
 
-- [ ] [Invite team members and collaborators](https://docs.gitlab.com/ee/user/project/members/)
-- [ ] [Create a new merge request](https://docs.gitlab.com/ee/user/project/merge_requests/creating_merge_requests.html)
-- [ ] [Automatically close issues from merge requests](https://docs.gitlab.com/ee/user/project/issues/managing_issues.html#closing-issues-automatically)
-- [ ] [Enable merge request approvals](https://docs.gitlab.com/ee/user/project/merge_requests/approvals/)
-- [ ] [Automatically merge when pipeline succeeds](https://docs.gitlab.com/ee/user/project/merge_requests/merge_when_pipeline_succeeds.html)
+## Structure of the Repository
 
-## Test and Deploy
+###### `app/`
 
-Use the built-in continuous integration in GitLab.
+This directory contains the notebooks you should run.
+They are split into three different categories:
 
-- [ ] [Get started with GitLab CI/CD](https://docs.gitlab.com/ee/ci/quick_start/index.html)
-- [ ] [Analyze your code for known vulnerabilities with Static Application Security Testing(SAST)](https://docs.gitlab.com/ee/user/application_security/sast/)
-- [ ] [Deploy to Kubernetes, Amazon EC2, or Amazon ECS using Auto Deploy](https://docs.gitlab.com/ee/topics/autodevops/requirements.html)
-- [ ] [Use pull-based deployments for improved Kubernetes management](https://docs.gitlab.com/ee/user/clusters/agent/)
-- [ ] [Set up protected environments](https://docs.gitlab.com/ee/ci/environments/protected_environments.html)
+| Name | Description |
+| --- | --- |
+| tutorials | These scripts explain basic usage of theoretical concepts and syntax of common software libraries. |
+| exercises | These scripts are meant as exercises for you. You can always use the tutorial scripts for help. |
+| solutions | These scripts are the solutions to the respective exercise. Look into them, if you want to check your own approach to the exercises. |
 
-***
+###### `data/`
 
-# Editing this README
+Data files used for the exercises.
 
-When you're ready to make this README your own, just edit this file and use the handy template below (or feel free to structure it however you want - this is just a starting point!). Thank you to [makeareadme.com](https://www.makeareadme.com/) for this template.
+###### `img/`
 
-## Suggestions for a good README
-Every project is different, so consider which of these sections apply to yours. The sections used in the template are suggestions for most open source projects. Also keep in mind that while a README can be too long and detailed, too long is better than too short. If you think your README is too long, consider utilizing another form of documentation rather than cutting out information.
+Images used in the notebooks or in the presentations.
 
-## Name
-Choose a self-explaining name for your project.
+###### `src/`
 
-## Description
-Let people know what your project can do specifically. Provide context and add a link to any reference visitors might be unfamiliar with. A list of Features or a Background subsection can also be added here. If there are alternatives to your project, this is a good place to list differentiating factors.
+Utility packages to keep code in the notebooks concise and problem focussed.
 
-## Badges
-On some READMEs, you may see small images that convey metadata, such as whether or not all the tests are passing for the project. You can use Shields to add some to your README. Many services also have instructions for adding a badge.
+## Developper's Note
 
-## Visuals
-Depending on what you are making, it can be a good idea to include screenshots or even a video (you'll frequently see GIFs rather than actual videos). Tools like ttygif can help, but check out Asciinema for a more sophisticated method.
-
-## Installation
-Within a particular ecosystem, there may be a common way of installing things, such as using Yarn, NuGet, or Homebrew. However, consider the possibility that whoever is reading your README is a novice and would like more guidance. Listing specific steps helps remove ambiguity and gets people to using your project as quickly as possible. If it only runs in a specific context like a particular programming language version or operating system or has dependencies that have to be installed manually, also add a Requirements subsection.
-
-## Usage
-Use examples liberally, and show the expected output if you can. It's helpful to have inline the smallest example of usage that you can demonstrate, while providing links to more sophisticated examples if they are too long to reasonably include in the README.
-
-## Support
-Tell people where they can go to for help. It can be any combination of an issue tracker, a chat room, an email address, etc.
-
-## Roadmap
-If you have ideas for releases in the future, it is a good idea to list them in the README.
-
-## Contributing
-State if you are open to contributions and what your requirements are for accepting them.
-
-For people who want to make changes to your project, it's helpful to have some documentation on how to get started. Perhaps there is a script that they should run or some environment variables that they need to set. Make these steps explicit. These instructions could also be useful to your future self.
-
-You can also document commands to lint the code or run tests. These steps help to ensure high code quality and reduce the likelihood that the changes inadvertently break something. Having instructions for running tests is especially helpful if it requires external setup, such as starting a Selenium server for testing in a browser.
+If you want to commit any changes to the jupyter notebooks, please make sure that the tutorial environment is active.
+This way, git only lists changes in notebooks, if the code cells were changed and ignores changes in outputs or meta data.
 
 ## Authors and acknowledgment
-Show your appreciation to those who have contributed to the project.
-
-## License
-For open source projects, say how it is licensed.
 
-## Project status
-If you have run out of energy or time for your project, put a note at the top of the README saying that development has slowed down or stopped completely. Someone may choose to fork your project or volunteer to step in as a maintainer or owner, allowing your project to keep going. You can also make an explicit request for maintainers.
+This repository has been created and is maintained by PTB Group 8.43.
+The development of this repository has been partially funded by the EMPIR project 20IND04-ATMOC.