removed __init__ to fix directory structure

.gitlab-ci.yml

@@ -16,11 +16,10 @@ mypy:
   script:
   - python --version
   - pip install -r requirements.txt
-  - cd code
   - apt-get update -qq && apt-get install -y -qq pandoc
   - python3 -m pip install --upgrade mypy
   - python3 -m pip install types-mock
-  - python -m mypy .
+  - python -m mypy code/
 
 flake8:
   stage: Static Analysis
@@ -28,10 +27,9 @@ flake8:
   script:
   - python --version
   - pip install -r requirements.txt
-  - cd code
   - apt-get update -qq && apt-get install -y -qq pandoc
   - python3 -m pip install --upgrade flake8
-  - flake8 --max-line-length=120 *.py
+  - flake8 --max-line-length=120 code/*.py
 
 pylint:
   stage: Static Analysis

code/__init__.py

-"""
-# # License
-
-# copyright Manuel Marschall (PTB) 2021
-
-# This software is licensed under the BSD-like license:
-
-# Redistribution and use in source and binary forms, with or without
-# modification, are permitted provided that the following conditions are met:
-
-# 1. Redistributions of source code must retain the above copyright notice,
-#    this list of conditions and the following disclaimer.
-# 2. Redistributions in binary form must reproduce the above copyright
-#    notice, this list of conditions and the following disclaimer in
-#    the documentation and/or other materials provided with the distribution.
-
-# DISCLAIMER
-# ----------
-# This software was developed at Physikalisch-Technische Bundesanstalt
-# (PTB). The software is made available "as is" free of cost. PTB assumes
-# no responsibility whatsoever for its use by other parties, and makes no
-# guarantees, expressed or implied, about its quality, reliability, safety,
-# suitability or any other characteristic. In no event will PTB be liable
-# for any direct, indirect or consequential damage arising in connection
-"""

code/example_generic.py

@@ -24,10 +24,9 @@
 # for any direct, indirect or consequential damage arising in connection
 """
 import os
-from code.utility import (gum_s1_reference, gum_reference,
-                          gum_rejection, mcmc_reference)
-from code.plot_utility import (plot_x, plot_mcmc_chains, plot_result_pdfs)
-from code.models import independent_model
+from utility import (gum_s1_reference, gum_reference, gum_rejection, mcmc_reference)
+from plot_utility import (plot_x, plot_mcmc_chains, plot_result_pdfs)
+from models import independent_model
 
 
 # `measurement model` and partial inverse `forward model`

code/example_mass_dem.py

@@ -26,9 +26,9 @@
 import os
 import json
 import numpy as np
-from code.utility import (gum_s1_reference, gum_reference, gum_rejection)
-from code.plot_utility import (plot_x, plot_result_pdfs)
-from code.models import independent_model
+from utility import (gum_s1_reference, gum_reference, gum_rejection)
+from plot_utility import (plot_x, plot_result_pdfs)
+from models import independent_model
 
 
 def get_options(nu0: int,                               # pylint: disable=invalid-name

code/example_mass_dem_ni.py

@@ -25,9 +25,9 @@
 """
 import os
 import numpy as np
-from code.utility import (gum_s1_reference, gum_reference, gum_rejection, mcmc_reference)
-from code.plot_utility import (plot_x, plot_mcmc_chains, plot_result_pdfs)
-from code.models import independent_model
+from utility import (gum_s1_reference, gum_reference, gum_rejection, mcmc_reference)
+from plot_utility import (plot_x, plot_mcmc_chains, plot_result_pdfs)
+from models import independent_model
 
 
 def get_options(exp: int = 1) -> dict:

code/example_mass_sb.py

@@ -25,9 +25,9 @@
 """
 import os
 import numpy as np
-from code.utility import (gum_s1_reference, gum_reference, gum_rejection, mcmc_reference)
-from code.plot_utility import plot_x, plot_mcmc_chains, plot_result_pdfs
-from code.models import independent_model
+from utility import (gum_s1_reference, gum_reference, gum_rejection, mcmc_reference)
+from plot_utility import plot_x, plot_mcmc_chains, plot_result_pdfs
+from models import independent_model
 
 
 def get_options() -> dict:

code/example_resistor.py

@@ -25,9 +25,9 @@
 """
 import os
 import numpy as np
-from code.utility import (gum_s1_reference, gum_reference, gum_rejection, mcmc_reference)
-from code.plot_utility import (plot_x, plot_mcmc_chains, plot_result_pdfs)
-from code.models import independent_model
+from utility import (gum_s1_reference, gum_reference, gum_rejection, mcmc_reference)
+from plot_utility import (plot_x, plot_mcmc_chains, plot_result_pdfs)
+from models import independent_model
 
 
 def measurement_model(RS: float,                # pylint: disable=invalid-name

code/plot_utility.py

@@ -27,7 +27,7 @@ from typing import Any, Union, Optional
 import matplotlib.pyplot as plt                     # type: ignore
 import numpy as np
 from scipy.stats import norm                        # type: ignore
-from code.utility import get_pdf_range, get_hist_data, get_pdf_range_minmax
+from utility import get_pdf_range, get_hist_data, get_pdf_range_minmax
 
 
 def plot_x(xbar: float,