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Commit 1ce75f36 authored by Hans Rabus's avatar Hans Rabus
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Update README.md

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2. Open a terminal and navigate to this directory. <br />
3. Compile the codes FilterExtrAp.f and PTra_c3h8_20170608HIT.f using a Fortran 90/95 compatible compiler. <br />
Example using gfortran and producing an executable PTra_HIT: <br />
$ gfortran **PTra_c3h8_20170608HIT.f** > ~/bin/PTra_HIT
$ *gfortran **PTra_c3h8_20170608HIT.f** > ~/bin/PTra_HIT* <br />
Example using gfortran and producing an executable PTra_HIT: <br />
$ gfortran **FilterExtrAp.f** > ~/bin/FilterExtrAp
$ *gfortran **FilterExtrAp.f** > ~/bin/FilterExtrAp*
### Step 2: Filter events containing charged particles from the Geant4 output files
Run the executable produced from FilterExtrAp.f best with a steering text file. <br />
Example with the executable produced above and the sample steering file **cox.dat**:
$ *~/bin/FilterExtrAp < cox.dat*
The first two lines are the numbers of files per case (PMMA thickness and primary energy) and of subdirectories (each corresponding to a combination of PMMA thickness and primary energy).
The third line is a flag that should be set to 0 if the results from the Geant4 simulations have been produced in different runs and are merged during the filtering. (In this case files named F_ExtractionScoringPlane_t*.dat resdiding in the output directories must be deleted before running FilterExtrAp.)
Example with the executable produced above and the sample steering file **cox.dat**: <br />
$ *~/bin/FilterExtrAp < cox.dat* <br />
The first two lines are the numbers of files per case (PMMA thickness and primary energy) and of subdirectories (each corresponding to a combination of PMMA thickness and primary energy). <br />
The third line is a flag that should be set to 0 if the results from the Geant4 simulations have been produced in different runs and are merged during the filtering. (In this case files named F_ExtractionScoringPlane_t*.dat resdiding in the output directories must be deleted before running FilterExtrAp.) <br />
The remaining even lines are the paths to the Geant4 simulation output files and the ensuing odd lines are the corresponding paths where the output files are written.
### Step 3: Run the simulations
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4. Open a terminal and navigate to the directory where the data files (produced by FilterExrAp) are situated. <br />
5. Start the simulation.<br />
Example with the steering file bco.dat: <br />
$ ~/bin/PTra_HIT < bco.dat <br />
$ *~/bin/PTra_HIT < bco.dat* <br />
The output files of the simulation are written to the directory in which the filtered datafiles reside.
## Contact
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